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algorithms:kamada [2018/10/18 13:41]
systems
algorithms:kamada [2018/12/20 14:25] (current)
systems
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 ^Parameter ^Type ^Default ^Description ^ ^Parameter ^Type ^Default ^Description ^
-|Iterations |int > 0 |500 |Number of iterations of the plugin.| +|Iterations|int > 0 |500 |Number of iterations of the plugin.| 
-|Initial temperature|float > 0 |10.0 |Proportional to the maximum node displacement allowed in each iteration.| +|Initial temperature |float > 0 |10.0 |Proportional to the maximum node displacement allowed in each iteration.| 
-|Cooling Factor|float ∈ (0,1) |0.990 |Reduction factor of the temperature in each iteration. Increase it to allow for large node displacements in the first iterations.| +|Cooling Factor |float ∈ (0,1) |0.990 |Reduction factor of the temperature in each iteration. Increase it to allow for large node displacements in the first iterations.| 
-|2D|Bool |False |Whether to use a 2D or 3D layout.| +|2D |Bool |False |Whether to use a 2D or 3D layout.| 
-|Seed|int |0 |Random seed| +|Seed |int |0 |Random seed| 
-|Link weight|text |None |Link property that represents the intensity of the attraction between connected nodes. Must have positive values| +|Link weight |text |None |Link property that represents the intensity of the attraction between connected nodes. Must have positive values| 
-|Reset Positions*|Bool |False |Whether to delete any previously calculated positions.|+|Reset Positions|Bool |False |Whether to delete any previously calculated positions.|
  
-    ​* //Advanced Configuration Parameter//+ * //Required Field//
  
 The next two plots are a 2D and 3D layout of a gene network (yeast). Node size corresponds to its [[Algorithms:​Degree|degree]] and its color identifies its [[Algorithms:​Communities_Louvain|community]]. The next two plots are a 2D and 3D layout of a gene network (yeast). Node size corresponds to its [[Algorithms:​Degree|degree]] and its color identifies its [[Algorithms:​Communities_Louvain|community]].
algorithms/kamada.txt · Last modified: 2018/12/20 14:25 by systems